Journal of integrative bioinformatics

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The official bioinformatics tool list for the Journal of Integrative Bioinformatics (JIB).

All bioinformatics tools published in JIB are automatically added to with first authors having the ability to edit their entries and directly import the tools information to


Web API 
Molecular interactions, pathways and networks Data management 
Biological pathways are crucial to much of the scientific research today including the study of specific biological processes related with human diseases. PathJam is a new comprehensive and freely accessible web-server application integrating scattered human pathway annotation from several public sources. The tool has been designed for both (i) being intuitive for wet-lab users providing statistical enrichment analysis of pathway annotations and (ii) giving support to the development of new integrative pathway applications. PathJam’s unique features and advantages include interactive graphs linking pathways and genes of interest, downloadable results in fully compatible formats, GSEA compatible output files and a standardized RESTful API.

JIB Publications
  • Glez-Peña D, Reboiro-Jato M, Domínguez R, Gómez-López G, Pisano DG, Fdez-Riverola F. PathJam: a new service for integrating biological pathway information. J Integr Bioinform. 2010;7(1). doi 10.2390/biecoll-jib-2010-147; PubMed 20980714