Journal of integrative bioinformatics

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The official bioinformatics tool list for the Journal of Integrative Bioinformatics (JIB).

All bioinformatics tools published in JIB are automatically added to with first authors having the ability to edit their entries and directly import the tools information to

IAP - The Integrated Analysis Platform for high-throughput plant image analysis

This work presents a sophisticated information system, the Integrated Analysis Platform (IAP), an approach supporting large-scale image analysis for different species and imaging systems. In its current form, IAP supports the investigation of Maize, Barley and Arabidopsis plants based on images obtained in different spectra. Several components of the IAP system, which are described in this work, cover the complete end-to-end pipeline, starting with the image transfer from the imaging infrastructure, (grid distributed) image analysis, data management for raw data and analysis results, to the automated generation of experiment reports.

JIB Publications
  • Klukas C, Pape JM, Entzian A. Analysis of high-throughput plant image data with the information system IAP. J Integr Bioinform. 2012;9(2):191. doi 10.2390/biecoll-jib-2012-191; PubMed 22745177